Stenotrophomonas riyadhensis sp. nov., isolated from a hospital floor swab

Guerrino Macori, Ahmed Ali Al-Qahtani, Leonard Koolman, Sahar Althawadi, Maysoon Mutabaqani, Rustom Bashtawi, Sulaiman Aljumaa, Reem Saad Almaghrabi, Séamus Fanning

Research output: Contribution to journalArticlepeer-review

Abstract

During the analysis of a collection of Pseudomonas strains linked to an outbreak in an intensive care unit at King Faisal Specialist Hospital and Research Center in 2019, one isolate (CFS3442<jats:sup/>T) was identified phenotypically as Pseudomonas aeruginosa. However, whole-genome sequencing revealed its true identity as a member of the genus Stenotrophomonas, distinct from both P. aeruginosa and Stenotrophomonas maltophilia. The isolate demonstrated: (i) a significant phylogenetic distance from P. aeruginosa; (ii) considerable genomic differences from several S. maltophilia reference strains and other Stenotrophomonas species; and (iii) unique phenotypic characteristics. Based on the combined geno- and phenotypic data, we propose that this isolate represents a novel species within the genus Stenotrophomonas, for which the name Stenotrophomonas riyadhensis sp. nov. is proposed. The type strain is CFS3442<jats:sup/>T (=NCTC 14921<jats:sup/>T=LMG 33162<jats:sup/>T).
Original languageEnglish
Article number006250
JournalInternational Journal of Systematic and Evolutionary Microbiology
Volume74
Issue number2
DOIs
Publication statusPublished - 23 Feb 2024
Externally publishedYes

Keywords

  • Stenotrophomonas maltophilia
  • Stenotrophomonas riyadhensis
  • average nucleotide identity (ANI)
  • digital DNA–DNA hybridization (dDDH)
  • genomic taxonomy
  • hospital outbreak
  • tetra nucleotide z-scores
  • whole-genome sequencing

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