TY - JOUR
T1 - Development of a memetic clustering algorithm for optimal spectral histology
T2 - Application to FTIR images of normal human colon
AU - Farah, Ihsen
AU - Nguyen, Thi Nguyet Que
AU - Groh, Audrey
AU - Guenot, Dominique
AU - Jeannesson, Pierre
AU - Gobinet, Cyril
N1 - Publisher Copyright:
© 2016 The Royal Society of Chemistry.
PY - 2016/6/7
Y1 - 2016/6/7
N2 - The coupling between Fourier-transform infrared (FTIR) imaging and unsupervised classification is effective in revealing the different structures of human tissues based on their specific biomolecular IR signatures; thus the spectral histology of the studied samples is achieved. However, the most widely applied clustering methods in spectral histology are local search algorithms, which converge to a local optimum, depending on initialization. Multiple runs of the techniques estimate multiple different solutions. Here, we propose a memetic algorithm, based on a genetic algorithm and a k-means clustering refinement, to perform optimal clustering. In addition, this approach was applied to the acquired FTIR images of normal human colon tissues originating from five patients. The results show the efficiency of the proposed memetic algorithm to achieve the optimal spectral histology of these samples, contrary to k-means.
AB - The coupling between Fourier-transform infrared (FTIR) imaging and unsupervised classification is effective in revealing the different structures of human tissues based on their specific biomolecular IR signatures; thus the spectral histology of the studied samples is achieved. However, the most widely applied clustering methods in spectral histology are local search algorithms, which converge to a local optimum, depending on initialization. Multiple runs of the techniques estimate multiple different solutions. Here, we propose a memetic algorithm, based on a genetic algorithm and a k-means clustering refinement, to perform optimal clustering. In addition, this approach was applied to the acquired FTIR images of normal human colon tissues originating from five patients. The results show the efficiency of the proposed memetic algorithm to achieve the optimal spectral histology of these samples, contrary to k-means.
UR - https://www.scopus.com/pages/publications/84971472441
U2 - 10.1039/c5an02227d
DO - 10.1039/c5an02227d
M3 - Article
C2 - 27110605
AN - SCOPUS:84971472441
SN - 0003-2654
VL - 141
SP - 3296
EP - 3304
JO - Analyst
JF - Analyst
IS - 11
ER -