Development of a memetic clustering algorithm for optimal spectral histology: Application to FTIR images of normal human colon

Ihsen Farah, Thi Nguyet Que Nguyen, Audrey Groh, Dominique Guenot, Pierre Jeannesson, Cyril Gobinet

    Research output: Contribution to journalArticlepeer-review

    Abstract

    The coupling between Fourier-transform infrared (FTIR) imaging and unsupervised classification is effective in revealing the different structures of human tissues based on their specific biomolecular IR signatures; thus the spectral histology of the studied samples is achieved. However, the most widely applied clustering methods in spectral histology are local search algorithms, which converge to a local optimum, depending on initialization. Multiple runs of the techniques estimate multiple different solutions. Here, we propose a memetic algorithm, based on a genetic algorithm and a k-means clustering refinement, to perform optimal clustering. In addition, this approach was applied to the acquired FTIR images of normal human colon tissues originating from five patients. The results show the efficiency of the proposed memetic algorithm to achieve the optimal spectral histology of these samples, contrary to k-means.

    Original languageEnglish
    Pages (from-to)3296-3304
    Number of pages9
    JournalAnalyst
    Volume141
    Issue number11
    DOIs
    Publication statusPublished - 7 Jun 2016

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